BioCreAtIvE - Critical Assessment for Information Extraction in Biology
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Bio-ontologies, hierarchies, terminologies



  • Gene Ontology: Gene Ontology TM (GO) for standard terminologies in molecular biology.
  • MGED.org: website of the MGED project for the development of an ontology for microarray experiments.
  • SOFG: Standards and Ontologies for Functional Genomics web site.
  • Cancer ontology: National Cancer Institute Thesaurus - ontology.
  • OBO: Open Biomedical Ontologies collection of ontologies for the biological and biomedical domain.
  • KO: KO (KEGG Orthology), functional hierarchies of KEGG pathways, ortholog groups, and protein families
  • GENIA Ontology: Ontology for formal model of cell signaling reactions in human
  • UMLS: Unified Medical Language System
  • MeSH: Medical Subject Headings vocabulary and terms
  • NCBI Taxonomy: Organism taxonomy provided by NCBI
  • UniProtKB/Swiss-Prot keywords: Swiss-Prot keyword categories



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© by Martin Krallinger 2006